Motifs.py -¶
- Tags
Python
Code¶
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Motifs.
countMotifs
(infile, motifs)¶ find regular expression motifs in sequences within fasta formatted infile.
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Motifs.
getCounts
(matches)¶ count numbers of motifs.
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Motifs.
getOccurances
(matches)¶ count numbers of motifs, but only once per sequence
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Motifs.
iupac2regex
(pattern)¶ convert iupac to regex pattern
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Motifs.
regex2iupac
(pattern)¶ convert regex to iupac pattern