bed2graph.py - compute the overlap graph between two bed files¶
- Tags
Python
Purpose¶
This script ouputs a list of the names of all overlapping intervals between two bed files.
Usage¶
Type:
python bed2graph.py A.bed.gz B.bed.gz > graph.out
for command line help.
Command line options¶
usage: bed2graph [-h] [--version] [-o {full,name}] [--timeit TIMEIT_FILE]
[--timeit-name TIMEIT_NAME] [--timeit-header]
[--random-seed RANDOM_SEED] [-v LOGLEVEL]
[--log-config-filename LOG_CONFIG_FILENAME]
[--tracing {function}] [-? ?] [-I STDIN] [-L STDLOG]
[-E STDERR] [-S STDOUT]
bed2graph: error: argument -?: expected one argument