cgat2dot.py - create a graph between cgat scripts¶
- Tags
Python
Purpose¶
This script creates an rdf description of a cgat script.
Optionally, the script outputs also a galaxy xml description of the scripts’ interface.
Usage¶
Example:
python cgat2dot.py scripts/*.py
Type:
python cgat2dot.py --help
for command line help.
Documentation¶
Command line options¶
usage: cgat2dot [-h] [-f {rdf,galaxy}] [-l FILENAME_LIST] [-s SRC_DIR]
[-r INPUT_REGEX] [-p OUTPUT_PATTERN] [--timeit TIMEIT_FILE]
[--timeit-name TIMEIT_NAME] [--timeit-header]
[--random-seed RANDOM_SEED] [-v LOGLEVEL]
[--log-config-filename LOG_CONFIG_FILENAME]
[--tracing {function}] [-? ?] [-I STDIN] [-L STDLOG]
[-E STDERR] [-S STDOUT]
cgat2dot: error: argument -?: expected one argument