cgat2dot.py - create a graph between cgat scripts

Tags

Python

Purpose

This script creates an rdf description of a cgat script.

Optionally, the script outputs also a galaxy xml description of the scripts’ interface.

Usage

Example:

python cgat2dot.py scripts/*.py

Type:

python cgat2dot.py --help

for command line help.

Documentation

Command line options

usage: cgat2dot [-h] [-f {rdf,galaxy}] [-l FILENAME_LIST] [-s SRC_DIR]
                [-r INPUT_REGEX] [-p OUTPUT_PATTERN] [--timeit TIMEIT_FILE]
                [--timeit-name TIMEIT_NAME] [--timeit-header]
                [--random-seed RANDOM_SEED] [-v LOGLEVEL]
                [--log-config-filename LOG_CONFIG_FILENAME]
                [--tracing {function}] [-? ?] [-I STDIN] [-L STDLOG]
                [-E STDERR] [-S STDOUT]
cgat2dot: error: argument -?: expected one argument