cgat_get_options.py - build a sorted list of all options used in scripts

Author

Tags

Python

Purpose

Go through all scripts in the cgat code collection and collect options used in the scripts.

This script expects to be executed at the root of the cgat code repository.

Usage

Example:

python cgat_get_options.py

Type:

python cgat_get_options.py --help

for command line help.

Command line options

usage: cgat-get-options [-h] [--inplace] [--options-tsv-file TSV_FILE]
                        [--timeit TIMEIT_FILE] [--timeit-name TIMEIT_NAME]
                        [--timeit-header] [--random-seed RANDOM_SEED]
                        [-v LOGLEVEL]
                        [--log-config-filename LOG_CONFIG_FILENAME]
                        [--tracing {function}] [-? ?] [-I STDIN] [-L STDLOG]
                        [-E STDERR] [-S STDOUT]
cgat-get-options: error: argument -?: expected one argument