index2bed.py - convert indexed fasta file to bed file

Tags

Python

Purpose

Usage

Type:

python <script_name>.py --help

for command line help.

Command line options

usage: index2bed [-h] [--version] [-g GENOME_FILE]
                 [--remove-regex REMOVE_REGEX] [-e GFF_FILE]
                 [-f FIXED_WIDTH_WINDOWS] [--timeit TIMEIT_FILE]
                 [--timeit-name TIMEIT_NAME] [--timeit-header]
                 [--random-seed RANDOM_SEED] [-v LOGLEVEL]
                 [--log-config-filename LOG_CONFIG_FILENAME]
                 [--tracing {function}] [-? ?] [-I STDIN] [-L STDLOG]
                 [-E STDERR] [-S STDOUT]
index2bed: error: argument -?: expected one argument