script_template.py

Tags

Python

Purpose

Convert the output of a metaphlan analysis to a preferred table format

Usage

Example:

python metaphlan2table.py --help

Type:

python metaphlan2table.py --help

for command line help.

Documentation

Code

usage: metaphlan2table [-h] [--version] [-t {read_map,rel_ab}]
                       [--timeit TIMEIT_FILE] [--timeit-name TIMEIT_NAME]
                       [--timeit-header] [--random-seed RANDOM_SEED]
                       [-v LOGLEVEL]
                       [--log-config-filename LOG_CONFIG_FILENAME]
                       [--tracing {function}] [-? ?] [-I STDIN] [-L STDLOG]
                       [-E STDERR] [-S STDOUT]
metaphlan2table: error: argument -?: expected one argument