vcfstats_sqlite.py - reformat output of vcf-stats for database loading¶
- Tags
Python
Purpose¶
create a csv separated file for loading into a database from output of vcf-stats utility in vcf-tools package.
Usage¶
Example:
python vcfstats_sqlite.py [files] > [outfile]
Type:
python vcfstats_sqlite.py --help
for command line help.
Command line options¶
usage: vcfstats2db [-h] [--version] [--timeit TIMEIT_FILE]
[--timeit-name TIMEIT_NAME] [--timeit-header]
[--random-seed RANDOM_SEED] [-v LOGLEVEL]
[--log-config-filename LOG_CONFIG_FILENAME]
[--tracing {function}] [-? ?] [-I STDIN] [-L STDLOG]
[-E STDERR] [-S STDOUT]
vcfstats2db: error: argument -?: expected one argument