vcfstats_sqlite.py - reformat output of vcf-stats for database loading

Tags

Python

Purpose

create a csv separated file for loading into a database from output of vcf-stats utility in vcf-tools package.

Usage

Example:

python vcfstats_sqlite.py [files] > [outfile]

Type:

python vcfstats_sqlite.py --help

for command line help.

Command line options

usage: vcfstats2db [-h] [--version] [--timeit TIMEIT_FILE]
                   [--timeit-name TIMEIT_NAME] [--timeit-header]
                   [--random-seed RANDOM_SEED] [-v LOGLEVEL]
                   [--log-config-filename LOG_CONFIG_FILENAME]
                   [--tracing {function}] [-? ?] [-I STDIN] [-L STDLOG]
                   [-E STDERR] [-S STDOUT]
vcfstats2db: error: argument -?: expected one argument