Motifs.py -

Tags

Python

Code

Motifs.countMotifs(infile, motifs)

find regular expression motifs in sequences within fasta formatted infile.

Motifs.getCounts(matches)

count numbers of motifs.

Motifs.getOccurances(matches)

count numbers of motifs, but only once per sequence

Motifs.iupac2regex(pattern)

convert iupac to regex pattern

Motifs.regex2iupac(pattern)

convert regex to iupac pattern